STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0309Putative peptide synthase regulatory protein; Similar to Pseudomonas syringae syringomycin biosynthesis enzyme SyrP SWALL:P97053 (EMBL:U88574) (353 aa) fasta scores: E(): 2.4e-22, 31.43% id in 334 aa, and to Streptomyces verticillus SyrP-like protein SWALL:Q9FB16 (EMBL:AF210249) (339 aa) fasta scores: E(): 1.8e-21, 29.51% id in 332 aa. (359 aa)    
Predicted Functional Partners:
BPSS0307
Similar to Bacillus subtilis betaine aldehyde dehydrogenase GbsA SWALL:DHAB_BACSU (SWALL:P71016) (490 aa) fasta scores: E(): 6.9e-59, 40.08% id in 474 aa, and to Salmonella typhi putative aldehyde dehydrogenase sty1467 SWALL:Q8Z747 (EMBL:AL627270) (481 aa) fasta scores: E(): 1.2e-101, 59.02% id in 471 aa.
  
  0.800
BPSS0308
Similar to Rhizobium loti aminotransferase mll3663 SWALL:Q98FQ6 (EMBL:AP003002) (472 aa) fasta scores: E(): 4.5e-88, 48.42% id in 444 aa, and to Pseudomonas aeruginosa probable class III aminotransferase pa4805 SWALL:Q9HV04 (EMBL:AE004893) (468 aa) fasta scores: E(): 4.9e-82, 47.21% id in 449 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.773
BPSL2229
Similar to Pseudomonas putida siderophore non-ribosomal peptide synthetase PpsD SWALL:Q9AKS6 (EMBL:AJ310530) (2246 aa) fasta scores: E(): 4.8e-102, 28.54% id in 2659 aa, and to the C-terminal region of Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 1.5e-94, 27.02% id in 3648 aa.
  
 0.717
BPSS0306
Similar to Xanthomonas albilineans albicidin multifunctional polyketide-peptide synthase XabB SWALL:Q9AIT3 (EMBL:AF239749) (4801 aa) fasta scores: E(): 1.4e-123, 36.11% id in 3458 aa, and to Bacillus subtilis putative polyketide synthase PksM or PksY SWALL:PKSM_BACSU (SWALL:P40872) (4273 aa) fasta scores: E(): 2.3e-93, 36% id in 2861 aa.
 
  
 0.705
BPSS0299
Putative fatty-acid CoA ligase; Similar to the N-terminal region of Streptomyces coelicolor polyketide synthase sco5892 or sc3f7.12 SWALL:O54155 (EMBL:AL939125) (2297 aa) fasta scores: E(): 2.6e-69, 41.73% id in 587 aa, and to the full length of Mycobacterium tuberculosis putative fatty-acid--CoA ligase rv1521 or mt1572 or mtcy19g5.07 SWALL:FD25_MYCTU (SWALL:Q50586) (583 aa) fasta scores: E(): 5.3e-56, 36.65% id in 592 aa.
  
 0.685
BPSS1809
Putative thioesterase; Similar to Pseudomonas aeruginosa probable thioesterase pa2425 SWALL:Q9I156 (EMBL:AE004670) (254 aa) fasta scores: E(): 1.2e-31, 41.46% id in 246 aa, and to Bacillus brevis gramicidin S biosynthesis GrsT protein SWALL:GRST_BACBR (SWALL:P14686) (256 aa) fasta scores: E(): 4e-31, 37.29% id in 244 aa.
 
    0.683
BPSS1195
Putative non-ribosomal peptide synthase; Similar to the N-terminus of Streptomyces verticillus peptide synthetase NRPS9-8 BlmX SWALL:Q9FB27 (EMBL:AF210249) (2162 aa) fasta scores: E(): 2.5e-11, 29.57% id in 470 aa, and to the N-terminus of Pseudomonas aeruginosa probable non-ribosomal peptide synthetase pa2302 SWALL:Q9I1H3 (EMBL:AE004656) (2124 aa) fasta scores: E(): 6.1e-10, 30.9% id in 466 aa.
  
 0.659
BPSS1812
Putative non-ribosomal peptide synthesis thioesterase; Similar to Bacillus brevis gramicidin S biosynthesis GrsT protein SWALL:GRST_BACBR (SWALL:P14686) (256 aa) fasta scores: E(): 6.4e-33, 36.84% id in 247 aa, and to Streptomyces coelicolor thioesterase sco5894 or sc3f7.14 SWALL:O54157 (EMBL:AL939125) (280 aa) fasta scores: E(): 2.3e-27, 37.87% id in 264 aa.
 
    0.659
BPSS1167
Putative thioesterase; C-terminal region is similar to Streptomyces avermitilis thioesterase PteH SWALL:Q93H75 (EMBL:AB070949) (255 aa) fasta scores: E(): 2.8e-23, 36.28% id in 226 aa, and Clostridium acetobutylicum thioesterase II of alpha/beta hydrolase superfamily cac1022 SWALL:Q97K97 (EMBL:AE007618) (253 aa) fasta scores: E(): 2.9e-24, 35.34% id in 215 aa. Possible alternative translational start site.
 
    0.657
BPSS0304
Hypothetical protein; No significant database matches.
 
     0.648
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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