STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0542Putative glycosyl hydrolase; Similar to Hansenula anomala invertase precursor INV1 SWALL:INV1_HANAN (SWALL:P40912) (550 aa) fasta scores: E(): 4.3e-41, 31.59% id in 519 aa, and to Acetobacter diazotrophicus levanase precursor LsdB SWALL:Q9RBJ1 (EMBL:L41732) (534 aa) fasta scores: E(): 1.4e-105, 53.09% id in 501 aa; Belongs to the glycosyl hydrolase 32 family. (554 aa)    
Predicted Functional Partners:
BPSL0320
PfkB family carbohydrate kinase; Similar to Escherichia coli fructokinase CscK SWALL:SCRK_ECOLI (SWALL:P40713) (307 aa) fasta scores: E(): 9.5e-18, 32.53% id in 292 aa, and to Deinococcus radiodurans fructokinase dr0728 SWALL:Q9RWE1 (EMBL:AE001928) (303 aa) fasta scores: E(): 6.8e-56, 54.05% id in 296 aa.
 
 
 0.950
scrK
Putative fructokinase; Similar to Klebsiella pneumoniae fructokinase ScrK SWALL:SCRK_KLEPN (SWALL:P26420) (307 aa) fasta scores: E(): 9e-17, 33.91% id in 286 aa, and to Ralstonia solanacearum probable fructokinase protein CscK or rsc2146 or rs01457 SWALL:Q8XXG8 (EMBL:AL646068) (318 aa) fasta scores: E(): 3.1e-86, 74.52% id in 318 aa, and to Rhizobium loti fructokinase mll7216 SWALL:Q986T6 (EMBL:AP003011) (317 aa) fasta scores: E(): 1.6e-41, 42.81% id in 320 aa.
  
 
 0.915
dalD
Similar to Klebsiella pneumoniae D-arabinitol 4-dehydrogenase DalD SWALL:DALD_KLEPN (SWALL:O52720) (455 aa) fasta scores: E(): 4.8e-98, 55.95% id in 445 aa, and to Ralstonia solanacearum D-arabinitol 4-dehydrogenase rsc2129 or rs01475 SWALL:DALD_RALSO (SWALL:P58708) (465 aa) fasta scores: E(): 2.5e-147, 78.66% id in 464 aa, and to Yersinia pestis D-arabinitol 4-dehydrogenase ypo2325 or y2008 SWALL:DALD_YERPE (SWALL:P58709) (463 aa) fasta scores: E(): 2.2e-102, 56.58% id in 463 aa. Possible alternative translational start site after codon 17.
     
 0.910
BPSS0543
Similar to Acetobacter diazotrophicus levansucrase precursor LsdA SWALL:SACB_ACEDI (SWALL:Q43998) (584 aa) fasta scores: E(): 4.8e-129, 66.8% id in 476 aa, and to Arthrobacter sp. K-1 beta-fructofuranosidase Bff SWALL:Q8VW87 (EMBL:AB062134) (578 aa) fasta scores: E(): 7.6e-109, 56.27% id in 526 aa; Belongs to the glycosyl hydrolase 68 family.
 
   
 0.888
BPSL0499
Phosphotransferase system, IIbc component; N-terminus is similar to the N-terminal region of Escherichia coli PTS system, N-acetylglucosamine-specific IIabc component NagE or PstN SWALL:PTAA_ECOLI (SWALL:P09323) (648 aa) fasta scores: E(): 1.2e-88, 52.51% id in 516 aa. Full length CDS is similar to Pseudomonas aeruginosa probable phosphotransferase system protein pa3761 SWALL:Q9HXN4 (EMBL:AE004794) (570 aa) fasta scores: E(): 1.2e-85, 56.15% id in 577 aa.
 
  
 0.797
BPSS1957
Similar to Escherichia coli 6-phosphofructokinase isozyme 2 PfkB or b1723 SWALL:K6P2_ECOLI (SWALL:P06999) (309 aa) fasta scores: E(): 1.8e-31, 39.48% id in 309 aa, and to Salmonella typhimurium 6-phosphofructokinase II Pfkb or stm1326 SWALL:Q8ZPT5 (EMBL:AE008757) (310 aa) fasta scores: E(): 7e-32, 39.15% id in 309 aa; Belongs to the carbohydrate kinase PfkB family.
  
   
 0.711
BPSL0498
Similar to Pseudomonas aeruginosa probable phosphotransferase protein pa3760 SWALL:Q9HXN5 (EMBL:AE004794) (842 aa) fasta scores: E(): 8e-102, 49.53% id in 860 aa. C-terminus is similar to the C-terminal region of Rhodobacter capsulatus multiphosphoryl transfer protein frub(hi) SWALL:PTF1_RHOCA (SWALL:P23388) (827 aa) fasta scores: E(): 2.7e-78, 40.73% id in 739 aa; Belongs to the PEP-utilizing enzyme family.
 
  
 0.648
BPSS1161
Putative response regulator protein; Similar to Ralstonia solanacearum EPS/virulence gene regulator VsrD SWALL:Q45416 (EMBL:U18135) (210 aa) fasta scores: E(): 3.3e-31, 48.09% id in 210 aa, and to Ralstonia solanacearum probable response regulator transcription regulator protein rsc0192 or rs00624 SWALL:Q8Y2Y9 (EMBL:AL646057) (215 aa) fasta scores: E(): 2.2e-45, 59.07% id in 215 aa, and to Ralstonia solanacearum response regulator transcription regulator protein VsrD or rsc0292 or rs03259 SWALL:Q8Y2P3 (EMBL:AL646058) (210 aa) fasta scores: E(): 3.3e-31, 48.09% id in 210 aa.
      
 0.579
BPSS1359
Similar to Synechocystis sp. response regulator Rcp1 or slr0474 SWALL:RCP1_SYNY3 (SWALL:Q55169) (147 aa) fasta scores: E(): 9.3e-25, 48.98% id in 147 aa, and to Anabaena sp. two-component response regulator alr1967 SWALL:Q8YVK8 (EMBL:AP003587) (148 aa) fasta scores: E(): 3.6e-30, 57.24% id in 138 aa, and to Methanosarcina acetivorans response regulator receiver ma1268 SWALL:Q8TRB2 (EMBL:AE010795) (148 aa) fasta scores: E(): 2.8e-29, 58.39% id in 137 aa.
      
 0.579
BPSS1803
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2489 SWALL:Q9I0Z3 (EMBL:AE004676) (271 aa) fasta scores: E(): 2.3e-43, 44.01% id in 259 aa, and to Streptomyces coelicolor putative AraC-family regulatory protein sco2294 or scc30.02C SWALL:Q9L019 (EMBL:AL939112) (278 aa) fasta scores: E(): 1.6e-23, 32.95% id in 267 aa.
      
 0.579
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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