STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0650Putative peptidase; Similar to Xanthomonas axonopodis succinyl-diaminopimelate desuccinylase xac2952 SWALL:AAM37797 (EMBL:AE011937) (497 aa) fasta scores: E(): 6e-105, 56.72% id in 476 aa, and to Xanthomonas campestris succinyl-diaminopimelate desuccinylase xcc2782 SWALL:AAM42054 (EMBL:AE012391) (497 aa) fasta scores: E(): 7.9e-104, 56.51% id in 476 aa. (483 aa)    
Predicted Functional Partners:
BPSS0649
Hypothetical protein; Poor database matches. Weakly similar to Rhizobium etli hypothetical protein SWALL:AAM54839 (EMBL:U80928) (157 aa) fasta scores: E(): 6.4, 28.14% id in 135 aa.
       0.584
BPSS0651
Similar to Ralstonia solanacearum hypothetical protein rsc0090 or rs02263 SWALL:Q8Y390 (EMBL:AL646057) (152 aa) fasta scores: E(): 3.1e-12, 45.94% id in 111 aa, and to Rhizobium loti hypothetical protein mlr0026 SWALL:Q98NQ9 (EMBL:AP002994) (107 aa) fasta scores: E(): 5e-08, 32.03% id in 103 aa.
       0.513
argA
Putative amino-acid acetyltransferase; Similar to Escherichia coli, and Escherichia coli O157:H7 amino-acid acetyltransferase ArgA SWALL:ARGA_ECOLI (SWALL:P08205) (443 aa) fasta scores: E(): 1.5e-76, 46.89% id in 435 aa, and to Ralstonia solanacearum probable amino-acid acetyltransferase protein rsc1250 or rs02762 SWALL:Q8XZZ5 (EMBL:AL646063) (451 aa) fasta scores: E(): 3.6e-123, 71.71% id in 449 aa. CDS is extended at the N-terminus in comparison to some orthologues. Possible alternative translational start site.
  
  
 0.458
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
  
 
 0.403
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.