STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0762Putative transporter protein; Similar to Agrobacterium vitis putative tartrate transporter TtuB SWALL:TUB3_AGRVI (SWALL:P70786) (449 aa) fasta scores: E(): 1.3e-55, 40.56% id in 424 aa, and to Ralstonia solanacearum probable permease transmembrane protein rsc2352 or rs01194 SWALL:Q8XWW8 (EMBL:AL646069) (442 aa) fasta scores: E(): 1.9e-59, 41.28% id in 419 aa. (445 aa)    
Predicted Functional Partners:
BPSS0791
Similar to Xanthomonas axonopodis hypothetical protein xac4185 SWALL:AAM39020 (EMBL:AE012069) (290 aa) fasta scores: E(): 1.5e-51, 53.73% id in 281 aa, and to Xanthomonas campestris hypothetical protein xcc4066 SWALL:AAM43287 (EMBL:AE012528) (290 aa) fasta scores: E(): 1e-49, 53.02% id in 281 aa.
  
  
 0.468
BPSS0763
Similar to Rhizobium loti hypothetical protein mll0106 SWALL:Q98NK0 (EMBL:AP002994) (309 aa) fasta scores: E(): 4.3e-76, 65.48% id in 310 aa, and to Archaeoglobus fulgidus hypothetical protein af1210 SWALL:O29058 (EMBL:AE001021) (313 aa) fasta scores: E(): 2.9e-58, 51.14% id in 307 aa.
       0.447
BPSS0764
Short chain dehydrogenase; Similar to Streptomyces galilaeus ketoacyl reductase AknIII SWALL:Q54190 (EMBL:D14040) (261 aa) fasta scores: E(): 6.2e-23, 37.98% id in 258 aa, and to Rhizobium loti probable short chain dehydrogenase mll1036 SWALL:Q98LG1 (EMBL:AP002996) (268 aa) fasta scores: E(): 1.8e-46, 54.51% id in 266 aa.
  
    0.417
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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