STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadHSimilar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] FadH or b3081 SWALL:FADH_ECOLI (SWALL:P42593) (671 aa) fasta scores: E(): 8.6e-165, 64.33% id in 673 aa, and to Streptomyces coelicolor 2,4-dienoyl-CoA reductase FadH or sco7066 or sc4g1.32 SWALL:Q9FC18 (EMBL:AL939130) (671 aa) fasta scores: E(): 1.8e-183, 71.32% id in 673 aa, and to Pseudomonas aeruginosa 2,4-dienoyl-Coareductase FadH1 or pa3092 SWALL:Q9HZB6 (EMBL:AE004733) (679 aa) fasta scores: E(): 6.1e-177, 68.64% id in 673 aa; possible alternative start site at codon 12. (673 aa)    
Predicted Functional Partners:
glt1
Glutamate synthase large subunit; Similar to Synechocystis sp. ferredoxin-dependent glutamate synthase 2 GltS or Sll1499 SWALL:GLTS_SYNY3 (SWALL:P55038) (1556 aa) fasta scores: E(): 0, 43.8% id in 1573 aa, and to Ralstonia solanacearum probable glutamate synthase GltB or Rsc2965 or Rs01332 SWALL:Q8XV66 (EMBL:AL646072) (1582 aa) fasta scores: E(): 0, 83.76% id in 1564 aa.
  
 
 0.999
BPSL0927
Similar to Ralstonia solanacearum putative reductase oxidoreductase protein rsc2434 or rs02670 SWALL:Q8XWN9 (EMBL:AL646070) (349 aa) fasta scores: E(): 5.2e-94, 64.34% id in 345 aa, and to Yersinia pestis, and Yersinia pseudotuberculosis cdp-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase AscD or RfbI or ypo3116 or y1067 SWALL:ASCD_YERPE (SWALL:P37911) (328 aa) fasta scores: E(): 5.8e-55, 43.37% id in 332 aa, and to Acinetobacter calcoaceticus phenolhydroxylase component SWALL:Q43983 (EMBL:Z36909) (350 aa) fasta scores: E(): 1.3e-40, 35.94% id in 345 aa, and to Salmonella ty [...]
  
 0.989
BPSS0553
Putative electron transfer flavoprotein beta-subunit; C-terminus is similar to the C-terminal region of Methylophilus methylotrophus electron transfer flavoprotein beta-subunit EtfB SWALL:ETFB_METME (SWALL:P53570) (264 aa) fasta scores: E(): 0.11, 27.92% id in 222 aa. Full length CDS is similar to Ralstonia solanacearum putative electron transfer flavoprotein beta-subunit rsp0061 or rs02036 SWALL:Q8XTP5 (EMBL:AL646076) (261 aa) fasta scores: E(): 6.7e-70, 77.39% id in 261 aa.
  
 
 0.955
etfB
Similar to Bradyrhizobium japonicum electron transfer flavoprotein beta-subunit EtfB or EtfS SWALL:ETFB_BRAJA (SWALL:P53575) (249 aa) fasta scores: E(): 3.4e-55, 69.47% id in 249 aa, and to Ralstonia solanacearum probable electron transfer flavoprotein EtfB or rsc0923 or rs04491 SWALL:Q8Y0X0 (EMBL:AL646061) (249 aa) fasta scores: E(): 1.4e-70, 85.14% id in 249 aa.
  
 
 0.952
BPSS1654
Cytochrome P450; Similar to Rhodococcus sp. NCIMB 9784 cytochrome P450 Rhf p450rhF SWALL:Q8KU27 (EMBL:AF459424) (773 aa) fasta scores: E(): 8.5e-183, 62.83% id in 783 aa, and to Rhodococcus erythropolis cytochrome p450 116 ThcB or Cyp116 SWALL:THCB_RHOER (SWALL:P43492) (436 aa) fasta scores: E(): 1.1e-88, 56.08% id in 419 aa.
   
 0.922
BPSL2890
Similar to Leptospira interrogans glutamate synthase GltB2 or lb286 SWALL:AAN51845 (EMBL:AE011615) (550 aa) fasta scores: E(): 2.5e-55, 42.5% id in 487 aa, and to Pseudomonas putida glutamate synthase, large subunit, putative pp1060 SWALL:AAN66685 (EMBL:AE016778) (539 aa) fasta scores: E(): 1.4e-141, 65.16% id in 534 aa.
  
 
 0.905
etfA
Similar to Bradyrhizobium japonicum electron transfer flavoprotein alpha-subunit EtfA or EtfL SWALL:ETFA_BRAJA (SWALL:P53573) (314 aa) fasta scores: E(): 5.7e-63, 65.59% id in 311 aa, and to Ralstonia solanacearum probable electron transfer flavoprotein etfa or rsc0924 or rs04490 SWALL:Q8Y0W9 (EMBL:AL646061) (311 aa) fasta scores: E(): 2e-80, 81.34% id in 311 aa.
  
 
 0.866
BPSS0552
Putative electron transfer flavoprotein alpha-subunit; CDS is extended at the N-terminus in comparison to most orthologues. C-terminal region is similar to Bradyrhizobium japonicum electron transfer flavoprotein alpha-subunit EtfA or EtfL SWALL:ETFA_BRAJA (SWALL:P53573) (314 aa) fasta scores: E(): 3.2e-14, 30.35% id in 313 aa. Full length CDS is similar to Ralstonia solanacearum putative electron transfer flavoprotein alpha-subunit rsp0060 or rs02035 SWALL:Q8XTP6 (EMBL:AL646076) (392 aa) fasta scores: E(): 2.1e-98, 71.89% id in 395 aa. Possible alternative translational start site.
  
 
 0.866
narH
Similar to Escherichia coli respiratory nitrate reductase 1 beta chain NarH SWALL:NARH_ECOLI (SWALL:P11349) (512 aa) fasta scores: E(): 3.5e-147, 68.72% id in 502 aa, and to Ralstonia solanacearum probable respiratory nitrate reductase oxidoreductase protein rsp0975 or rs02307 SWALL:Q8XR84 (EMBL:AL646082) (515 aa) fasta scores: E(): 1.3e-182, 85.49% id in 517 aa. Similar to BPSS1158, 73.415% identity (73.415% ungapped) in 489 aa overlap.
    
 
 0.802
narH-2
Similar to Paracoccus denitrificans nitrate reductase subunit NarH protein SWALL:Q56355 (EMBL:Z26255) (505 aa) fasta scores: E(): 8.3e-156, 73.82% id in 489 aa, and to Brucella melitensis nitrate reductase beta chain BmeII0951 SWALL:Q8YBE9 (EMBL:AE009728) (512 aa) fasta scores: E(): 1.6e-165, 76.11% id in 494 aa, and to Pseudomonas aeruginosa respiratory nitrate reductase beta subunit NarH or pa3874 SWALL:O54044 (EMBL:Y15252) (513 aa) fasta scores: E(): 3.3e-158, 75.54% id in 503 aa, and to Pseudomonas fluorescens respiratory nitrate reductase beta subunit NarH SWALL:Q9F0X6 (EMBL:AF197 [...]
    
 
 0.802
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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