STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1562Kumamolisin; Similar to Bacillus subtilis kumamolysin kumA SWALL:Q8RR56 (EMBL:AB070740) (572 aa) fasta scores: E(): 6e-86, 50.64% id in 541 aa, and to Pseudomonas sp. pseudomonapepsin precursor Pcp SWALL:PICP_PSESR (SWALL:P42790) (587 aa) fasta scores: E(): 2.2e-29, 31.64% id in 534 aa. (529 aa)    
Predicted Functional Partners:
BPSS0768
Conserved hypothetical protein (fragment); Possible gene remnant. Similar to the C-terminal regions of Bradyrhizobium japonicum USDA 110 BLL6723 protein SWALL:Q89FH7 (EMBL:AP005959) (568 aa) fasta scores: E(): 2.1e-10, 52.27% id in 88 aa, and Francisella novicida acid phosphatase precursor acpA SWALL:Q47936 (EMBL:L39831) (514 aa) fasta scores: E(): 0.093, 38.59% id in 57 aa.
  
     0.672
hoxN
Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN SWALL:HOXN_ALCEU (SWALL:P23516) (351 aa) fasta scores: E(): 4.3e-78, 58.11% id in 339 aa, and to Bradyrhizobium japonicum hydrogenase nickel incorporation protein HupN SWALL:HUPN_BRAJA (SWALL:Q45247) (381 aa) fasta scores: E(): 1e-61, 54.23% id in 319 aa; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.553
BPSL0295
Putative natural resistance-associated macrophage protein; N-terminal region is similar to Pseudomonas aeruginosa manganese transport protein MntH2 SWALL:MNT2_PSEAE (SWALL:Q9RPF2) (438 aa) fasta scores: E(): 7.4e-14, 26.54% id in 437 aa. Similar to Burkholderia cepacia genomovar III natural resistance-associated macrophage protein NRAMP SWALL:Q8VP26 (EMBL:AY028431) (548 aa) fasta scores: E(): 4.1e-176, 82.24% id in 552 aa.
  
     0.486
BPSS2110
Putative exported protein; Similar to Xylella fastidiosa hypothetical protein Xf1451 SWALL:Q9PDC8 (EMBL:AE003975) (636 aa) fasta scores: E(): 1.5e-39, 28.15% id in 618 aa, and to Xanthomonas axonopodis hypothetical protein Xac2007 SWALL:AAM36869 (EMBL:AE011836) (642 aa) fasta scores: E(): 4.2e-38, 27.45% id in 641 aa, and to Xanthomonas campestris hypothetical protein Xcc1973 SWALL:AAM41262 (EMBL:AE012301) (642 aa) fasta scores: E(): 1.5e-36, 27.07% id in 628 aa.
  
     0.447
plcN
Hypothetical protein (pseudogene); Hydrolyzes phosphatidylserine as well as phosphatidylcholine.
  
     0.434
BPSS1012
Similar to Salmonella typhimurium voltage-gated clc-type chloride channel EriC or stm0203 SWALL:ERIC_SALTY (SWALL:Q8ZRP8) (473 aa) fasta scores: E(): 1.3e-18, 27.84% id in 431 aa, and to Ralstonia solanacearum probable transmembrane protein rsc2431 or rs02676 SWALL:Q8XWP2 (EMBL:AL646070) (599 aa) fasta scores: E(): 4.4e-131, 68.8% id in 625 aa, and to Rhizobium loti chloride channel protein mll1477 SWALL:Q98KH1 (EMBL:AP002997) (612 aa) fasta scores: E(): 7.8e-90, 54.41% id in 487 aa.
  
     0.426
BPSL2070
Hypothetical protein; No significant database matches.
 
     0.423
BPSL1092
Putative membrane protein; Similar to Thermoplasma volcanium hypothetical protein tv1324 or tvg1365320 SWALL:Q978U1 (EMBL:AP000996) (66 aa) fasta scores: E(): 3.5e-06, 46.15% id in 52 aa, and to Thermoplasma acidophilum hypothetical membrane protein ta0299 SWALL:Q9HLC9 (EMBL:AL445063) (86 aa) fasta scores: E(): 6.1e-06, 44.23% id in 52 aa.
  
     0.422
plcN2
Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_PSEAE (SWALL:P15713) (692 aa) fasta scores: E(): 2.5e-77, 48.87% id in 708 aa, and to Burkholderia pseudomallei non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_BURPS (SWALL:Q9RGS8) (700 aa) fasta scores: E(): 2.2e-128, 52.84% id in 721 aa. Similar to BPSL2403, 52.705% identity (56.632% ungapped) in 721 aa overlap.
  
     0.417
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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