STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1611Conserved hypothetical protein; Similar to Xanthomonas campestris HpaB SWALL:Q9WWG3 (EMBL:AF056246) (162 aa) fasta scores: E(): 2e-29, 53.84% id in 156 aa, and to Burkholderia pseudomallei hypothetical 16.8 kDa protein SWALL:Q93KY8 (EMBL:AF074878) (151 aa) fasta scores: E(): 2e-41, 68% id in 150 aa. (151 aa)    
Predicted Functional Partners:
BPSS1612
Hypothetical protein; No significant database matches.
       0.538
BPSS1610
AraC-family transcriptional regulator; Similar to Ralstonia solanacearum regulatory protein HrpB or rsp0873 or rs01644 SWALL:HRPB_RALSO (SWALL:P31778) (477 aa) fasta scores: E(): 1e-53, 37.65% id in 486 aa, and to Burkholderia pseudomallei hypothetical 54.7 kDa protein SWALL:Q93L01 (EMBL:AF074878) (483 aa) fasta scores: E(): 2.9e-59, 41.17% id in 493 aa.
       0.439
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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