STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1702Hypothetical protein; Poor database matches. Alanine rich low complexity protein. Possible C-terminal region of a pseudogene, Possible N-terminal region is BPSS17023. (377 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.879
trpF
Similar to Pseudomonas aeruginosa N-(5'-phosphoribosyl)anthranilate isomerase TrpF or pa3113 SWALL:TRPF_PSEAE (SWALL:Q59649) (211 aa) fasta scores: E(): 9.4e-34, 51.64% id in 213 aa, and to Acinetobacter calcoaceticus N-(5'-phosphoribosyl)anthranilate isomerase TrpF SWALL:TRPF_ACICA (SWALL:P16923) (213 aa) fasta scores: E(): 2.8e-28, 45.41% id in 218 aa. CDS is extended at the N-terminus in comparison to orthologues.
       0.792
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.608
BPSS1698
Similar to Rhodobacter sphaeroides modification methylase RsrIM SWALL:MTR1_RHOSH (SWALL:P14751) (319 aa) fasta scores: E(): 4.1e-25, 38.96% id in 231 aa, and to Bacillus subtilis modification methylase BglIIM SWALL:MTB2_BACSU (SWALL:Q45489) (360 aa) fasta scores: E(): 3.3e-22, 35.03% id in 254 aa; Belongs to the N(4)/N(6)-methyltransferase family.
  
    0.578
BPSS1703
Putative membrane protein; Poor database matches. Alanine rich low complexity protein.
      0.565
BPSL0388
Putative exported protein; Similar to Ralstonia solanacearum putative prolin-rich signal peptide protein rsc0299 or rs03266 SWALL:Q8Y2N6 (EMBL:AL646058) (355 aa) fasta scores: E(): 3e-17, 42.35% id in 366 aa.
    
 
 0.542
BPSL2552
Putative lipoprotein; Similar to Ralstonia solanacearum putative signal peptide protein rsp1270 or rs05315 SWALL:Q8XQF7 (EMBL:AL646083) (417 aa) fasta scores: E(): 1.8e-93, 62.75% id in 392 aa.
    
 
 0.542
BPSS1979
Putative exported protein; No significant database matches.
    
 
 0.542
BPSS2166
Hypothetical protein; N-terminus is similar to the C-terminal region of Frankia sp. CpI1 hypothetical protein SWALL:Q9AEZ8 (EMBL:AY027524) (471 aa) fasta scores: E(): 2.7e-16, 42.3% id in 416 aa. CDS contains alanine rich region, residues 25 to 413.
    
 
 0.542
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.533
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.