STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catBSimilar to Acinetobacter lwoffii muconate cycloisomerase I 1 CatB1 SWALL:CTB1_ACILW (SWALL:O33946) (379 aa) fasta scores: E(): 7.3e-80, 62.53% id in 371 aa, and to Burkholderia sp. TH2 cis,cis-muconate lactonizing enzyme CatB2 SWALL:BAC16768 (EMBL:AB035325) (395 aa) fasta scores: E(): 3.5e-92, 73.76% id in 343 aa; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (377 aa)    
Predicted Functional Partners:
catA
Similar to Acinetobacter lwoffii catechol 1,2-dioxygenase 2 CatA2 SWALL:CTA2_ACILW (SWALL:O33950) (275 aa) fasta scores: E(): 4.6e-84, 81.22% id in 261 aa, and to Burkholderia sp. TH2 catechol 1,2-dioxygenase CatA2 SWALL:BAC16769 (EMBL:AB035325) (300 aa) fasta scores: E(): 3.4e-90, 74.66% id in 300 aa.
 
 
 0.999
catC
Similar to Acinetobacter lwoffii muconolactone delta-isomerase 2 CatC2 SWALL:CTC2_ACILW (SWALL:O33951) (96 aa) fasta scores: E(): 2.9e-32, 80.2% id in 96 aa, and to Pseudomonas putida muconolactone delta-isomerase CatC SWALL:CATC_PSEPU (SWALL:P00948) (96 aa) fasta scores: E(): 4.4e-28, 73.95% id in 96 aa.
 
 
 0.998
benC
Similar to Acinetobacter calcoaceticus benzoate 1,2-dioxygenase electron transfer component [includes: ferredoxin; ferredoxin--NAD(+) reductase (EC 1.18.1.3)] BenC SWALL:BENC_ACICA (SWALL:P07771) (348 aa) fasta scores: E(): 3.8e-77, 61.49% id in 335 aa, and to Pseudomonas putida benzoate dioxygenase-ferredoxin reductase BenC SWALL:Q9L7Y3 (EMBL:AF218267) (336 aa) fasta scores: E(): 2.4e-69, 56.25% id in 336 aa.
 
  
 0.927
benD
Similar to Acinetobacter calcoaceticus cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase BenD SWALL:BEND_ACICA (SWALL:P07772) (261 aa) fasta scores: E(): 1.3e-60, 64.45% id in 256 aa, and to Pseudomonas putida cis-diol dehydrogenase BenD SWALL:Q9L7Y2 (EMBL:AF218267) (253 aa) fasta scores: E(): 2.6e-61, 67.57% id in 256 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.914
benB
Similar to Acinetobacter calcoaceticus benzoate 1,2-dioxygenase beta subunit BenB SWALL:BENB_ACICA (SWALL:P07770) (169 aa) fasta scores: E(): 1.8e-48, 71.16% id in 163 aa, and to Pseudomonas putida benzoate 1,2-dioxygenase small subunit BenB SWALL:Q93SR7 (EMBL:AY026914) (162 aa) fasta scores: E(): 1.3e-42, 66.45% id in 155 aa.
 
  
 0.910
BPSL3286
Similar to Pseudomonas sp. CA10 dienelactone hydrolase SWALL:Q9AQN6 (EMBL:AB047548) (273 aa) fasta scores: E(): 5.3e-32, 45.16% id in 217 aa, and to Pseudomonas putida, and Pseudomonas sp. carboxymethylenebutenolidase ClcD SWALL:CLCD_PSEPU (SWALL:P11453) (236 aa) fasta scores: E(): 9.8e-23, 35.37% id in 229 aa.
   
 
 0.906
BPSS1767
Putative carboxymethylenebutenolidase; Similar to Pseudomonas putida, and Pseudomonas sp. carboxymethylenebutenolidase ClcD SWALL:CLCD_PSEPU (SWALL:P11453) (236 aa) fasta scores: E(): 4e-07, 28.07% id in 228 aa, and to Escherichia coli putative carboxymethylenebutenolidase YsgA or b3830 SWALL:DLHH_ECOLI (SWALL:P56262) (271 aa) fasta scores: E(): 3.6e-52, 52.65% id in 264 aa.
   
 
 0.906
benA
Similar to Acinetobacter calcoaceticus benzoate 1,2-dioxygenase alpha subunit BenA SWALL:BENA_ACICA (SWALL:P07769) (461 aa) fasta scores: E(): 2.6e-150, 74.65% id in 438 aa, and to Pseudomonas putida benzoate 1,2-dioxygenase large subunit BenA SWALL:Q93SR8 (EMBL:AY026914) (455 aa) fasta scores: E(): 1.8e-142, 73.68% id in 437 aa.
 
  
 0.801
BPSS1890
Similar to Acinetobacter lwoffii probable cat1 operon transcriptional activator SWALL:CATR_ACILW (SWALL:O33945) (303 aa) fasta scores: E(): 5.3e-46, 47.29% id in 296 aa, and to Burkholderia sp. NK8 LysR-type transcriptional regulatory protein CbeR SWALL:Q9AQS6 (EMBL:AB024746) (306 aa) fasta scores: E(): 2.5e-53, 55.19% id in 279 aa.
 
     0.790
BPSS1902
Similar to Burkholderia sp. NK8 LysR-type transcriptional regulatory protein CbeR SWALL:Q9AQS6 (EMBL:AB024746) (306 aa) fasta scores: E(): 2.8e-94, 83.05% id in 301 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 8.9e-54, 47.69% id in 304 aa.
 
     0.649
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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