STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mprASerine metalloprotease precursor; Previously sequenced as Burkholderia pseudomallei serine metalloprotease precursor SWALL:Q9F881 (EMBL:AF254803) (500 aa) fasta scores: E(): 7.7e-170, 100% id in 500 aa. Similar to Xanthomonas campestris extracellular protease precursor xcc0851 SWALL:EXPR_XANCP (SWALL:P23314) (580 aa) fasta scores: E(): 4.5e-65, 49.02% id in 463 aa. (500 aa)    
Predicted Functional Partners:
BPSS0658
Transposase (fragment); Imperfect repeat, AGI7.
      
 0.573
BPSL0574
Subtilase family protein; Poor database matches. Internal region is weakly similar to an internal region of Bacillus sp. subtilisin precursor Sub1 SWALL:SUBT_BACS9 (SWALL:P28842) (420 aa) fasta scores: E(): 0.036, 28.52% id in 305 aa. N-terminus is weakly similar to the N-terminal region of Thermoanaerobacter tengcongensis subtilisin-like serine proteases TTE0824 SWALL:Q8RBJ2 (EMBL:AE013049) (561 aa) fasta scores: E(): 0.003, 26.44% id in 484 aa.
  
     0.481
BPSS0803
Similar to Bacillus cereus hemolysin III SWALL:HLY3_BACCE (SWALL:P54176) (219 aa) fasta scores: E(): 1.2e-31, 46.46% id in 198 aa, and to Neisseria meningitidis putative haemolysin nma1900 SWALL:Q9JTB2 (EMBL:AL162757) (208 aa) fasta scores: E(): 1.5e-45, 58.17% id in 208 aa.
      
 0.455
pmlR
N-acylhomoserine lactone dependent regulatory protein; Similar to Ralstonia solanacearum transcriptional activator protein SolR SWALL:SLR2_RALSO (SWALL:O30919) (236 aa) fasta scores: E(): 2.2e-66, 67.79% id in 236 aa, and to Burkholderia cepacia transcriptional activator CepR SWALL:Q9ZIU0 (EMBL:AF019654) (239 aa) fasta scores: E(): 2.7e-81, 79.91% id in 239 aa.
   
  
 0.423
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
      
 0.418
BPSS0563
Aminopeptidase; Similar to the N-terminal region of Vibrio proteolyticus bacterial leucyl aminopeptidase precursor SWALL:AMPX_VIBPR (SWALL:Q01693) (504 aa) fasta scores: E(): 1.8e-62, 45.27% id in 402 aa, and to the full length Aeromonas punctata aminopeptidase ApaC SWALL:O82996 (EMBL:AB015725) (393 aa) fasta scores: E(): 2.6e-61, 46.63% id in 401 aa.
  
   
 0.415
BPSL0624
Putative protease; Similar to Pseudomonas aeruginosa staphylolytic protease preproenzyme LasA SWALL:P72166 (EMBL:U68175) (263 aa) fasta scores: E(): 1.5e-12, 39.43% id in 284 aa, and to Xanthomonas axonopodis hypothetical protein xac0112 SWALL:AAM35004 (EMBL:AE011634) (263 aa) fasta scores: E(): 8.4e-18, 45.55% id in 281 aa.
      
 0.408
BPSS1992
Family S15 non-peptidase homologue; Similar to Lactobacillus helveticus PepX SWALL:Q59485 (EMBL:U22900) (793 aa) fasta scores: E(): 6.2e-23, 28.68% id in 624 aa, and to Lactobacillus delbrueckii Xaa-Pro dipeptidyl-peptidase PepX SWALL:PEPX_LACDL (SWALL:P40334) (792 aa) fasta scores: E(): 4.7e-22, 27.5% id in 629 aa. Note: This CDS does not present any similarity from residue 61 to any of the database matches.
     
 0.408
BPSS0067
Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN or pa3319 SWALL:PHLN_PSEAE (SWALL:P15713) (692 aa) fasta scores: E(): 6e-54, 53.29% id in 728 aa, and to Burkholderia pseudomallei non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_BURPS (SWALL:Q9RGS8) (700 aa) fasta scores: E(): 4e-39, 45.43% id in 744 aa.
      
 0.406
plcN2
Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_PSEAE (SWALL:P15713) (692 aa) fasta scores: E(): 2.5e-77, 48.87% id in 708 aa, and to Burkholderia pseudomallei non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_BURPS (SWALL:Q9RGS8) (700 aa) fasta scores: E(): 2.2e-128, 52.84% id in 721 aa. Similar to BPSL2403, 52.705% identity (56.632% ungapped) in 721 aa overlap.
      
 0.404
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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