STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS2142Putative MerR family transcriptional regulator; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa4987 SWALL:Q9HUH8 (EMBL:AE004911) (199 aa) fasta scores: E(): 1.2e-15, 35.71% id in 182 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa4499 SWALL:Q9HVS2 (EMBL:AE004863) (187 aa) fasta scores: E(): 5.9e-15, 32.58% id in 178 aa, and to Fusobacterium nucleatum transcriptional regulator, merr family fn1928 SWALL:Q8RHS0 (EMBL:AE010495) (184 aa) fasta scores: E(): 1.6e-13, 31.52% id in 184 aa. (193 aa)    
Predicted Functional Partners:
BPSL0677
Putative DNA binding protein; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2312 SWALL:Q9I1G3 (EMBL:AE004657) (193 aa) fasta scores: E(): 4.4e-32, 56.98% id in 186 aa, and to Streptomyces coelicolor putative transcriptional regulatory protein sco1312 or scbac36f5.23C SWALL:Q93IV8 (EMBL:AL592292) (201 aa) fasta scores: E(): 1.2e-11, 34.37% id in 192 aa, and to Bacillus halodurans hypothetical protein Bh2909 bh2909 SWALL:Q9K8U3 (EMBL:AP001517) (189 aa) fasta scores: E(): 2.4e-10, 31.18% id in 186 aa.
  
  
 0.746
BPSL2709
Similar to Streptomyces coelicolor putative DNA-binding protein Sco6802 or sc1a2.11 SWALL:Q9L230 (EMBL:AL138598) (192 aa) fasta scores: E(): 5.8e-21, 43.95% id in 182 aa and to Ralstonia solanacearum putative transcription regulatory protein rsc3132 or rs00471 SWALL:Q8XUQ4 (EMBL:AL646073) (209 aa) fasta scores: E(): 8.6e-38, 58.33% id in 192 aa.
  
  
 0.720
BPSL0549A
Putative DNA-binding protein; N-terminus is similar to Corynebacterium glutamicum hypothetical protein SWALL:Q8VVJ6 (EMBL:AJ420072) (81 aa) fasta scores: E(): 0.0066, 46.66% id in 60 aa, and to the N-terminal region of Lactobacillus plantarum WCFS1 prophage LP1 protein 8 SWALL:Q88YW0 (EMBL:AL935253) (120 aa) fasta scores: E(): 0.008, 50% id in 56 aa.
  
  
 0.650
BPSS1226
Hypothetical protein; No significant database matches.
     
 0.609
BPSL0562
Putative DNA-binding protein; N-terminus is similar to the N-terminal region of Stigmatella aurantiaca putative transcriptional repressor SWALL:Q93TW4 (EMBL:AF319998) (119 aa) fasta scores: E(): 3.1e-06, 48.64% id in 74 aa. Full length CDS is weakly similar to Clostridium acetobutylicum predicted transcriptional regulator cac1578 SWALL:Q97IR2 (EMBL:AE007667) (110 aa) fasta scores: E(): 0.01, 27.36% id in 95 aa.
   
  
 0.605
msr0960
Putative DNA-binding protein; Similar to Rhizobium loti hypothetical protein msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 7.7e-06, 41.79% id in 67 aa, and to Shewanella oneidensis transcriptional regulator, Cro/CI family SC1469 SWALL:AAN54530 (EMBL:AE015592) (84 aa) fasta scores: E(): 5.7e-05, 44.44% id in 63 aa.
   
  
 0.602
BPSL2333
Similar to Escherichia coli O157:H7 hypothetical protein ecs1067 SWALL:Q8X2Z4 (EMBL:AP002554) (95 aa) fasta scores: E(): 7.4e-08, 40.96% id in 83 aa, and to Escherichia coli O157:H7 hypothetical protein ecs2281 SWALL:Q8X366 (EMBL:AP002557) (92 aa) fasta scores: E(): 1.4e-07, 43.37% id in 83 aa.
     
 0.588
BPSS0390
Similar to Rhizobium meliloti hypothetical protein r02039 or smc04441 SWALL:Q92K60 (EMBL:AL591789) (62 aa) fasta scores: E(): 1.9e-11, 61.01% id in 59 aa, and to Clostridium perfringens hypothetical protein pcp27 SWALL:Q93MC0 (EMBL:AP003515) (65 aa) fasta scores: E(): 6.2e-11, 53.44% id in 58 aa.
     
 0.512
BPSL1564
Putative transcriptional regulatory protein; Similar to Pseudomonas aeruginosa hypothetical protein pa2785 SWALL:Q9I058 (EMBL:AE004706) (72 aa) fasta scores: E(): 3.1e-19, 78.26% id in 69 aa, and to Caulobacter crescentus transcriptional regulator, cro/ci family cc3270 SWALL:Q9A3D4 (EMBL:AE005990) (75 aa) fasta scores: E(): 4.1e-16, 67.56% id in 74 aa.
      
 0.511
BPSS1008
Putative polyketide synthase; N-terminal region is similar to the the N-terminal region of Bacillus subtilis putative polyketide synthase PksK SWALL:PKSK_BACSU (SWALL:P40803) (4447 aa) fasta scores: E(): 1.1e-167, 38.79% id in 3439 aa. Internal region is similar to an internal region of Pseudomonas fluorescens MmpIV protein SWALL:Q8RL72 (EMBL:AF318063) (6521 aa) fasta scores: E(): 2.8e-41, 32.83% id in 4069 aa.
  
  
 0.509
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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