STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acyPSimilar to Pyrococcus furiosus putative acylphosphatase pf0283 SWALL:Q8U414 (EMBL:AE010152) (91 aa) fasta scores: E(): 3.1e-11, 49.38% id in 81 aa, and to Ralstonia solanacearum putative acylphosphatase protein rsc0219 or rs00651 SWALL:Q8Y2W3 (EMBL:AL646058) (119 aa) fasta scores: E(): 3.4e-11, 52.87% id in 87 aa, and to Pyrococcus abyssi acylphosphatase pab7421 SWALL:Q9UY47 (EMBL:AJ248288) (91 aa) fasta scores: E(): 9.4e-11, 48.14% id in 81 aa. (98 aa)    
Predicted Functional Partners:
BPSS1955
Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein; N-terminal region similar to Pseudomonas aeruginosa (R)-specific enoyl-CoA hydratase PhaJ1 or pa3302 SWALL:Q9LBK2 (EMBL:AB040025) (156 aa) fasta scores: E(): 1.1e-17, 44.44% id in 153 aa, and C-terminal region to Rhizobium meliloti phosphate acetyltransferase Pta SWALL:PTA_RHIME (SWALL:Q9X448) (316 aa) fasta scores: E(): 5.4e-55, 57.37% id in 305 aa.
    
 0.926
ackA
Putative acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.918
BPSL1183
Putative glutamyl-tRNA amidotransferase; Similar to Pseudomonas aeruginosa probable amidase pa0704 SWALL:Q9I5M2 (EMBL:AE004506) (464 aa) fasta scores: E(): 3.4e-115, 64.79% id in 463 aa, and to Agrobacterium tumefaciens glutamyl-tRNA amidotransferase subunit A atu4441 or agr_l_854 SWALL:Q8U7K8 (EMBL:AE009373) (465 aa) fasta scores: E(): 4.1e-103, 58.96% id in 463 aa. Note: It has a possible alternative start codon located in the intergenic region, 75 bp upstream.
    
  0.903
BPSS0911
Putative amidase; Similar to Bacillus subtilis glutamyl-tRNA(Gln) amidotransferase subunit A GatA SWALL:GATA_BACSU (SWALL:O06491) (485 aa) fasta scores: E(): 7.3e-30, 34.67% id in 496 aa, and to Pseudomonas aeruginosa probable amidase pa4342 SWALL:Q9HW59 (EMBL:AE004850) (494 aa) fasta scores: E(): 6.5e-115, 60.78% id in 482 aa; Belongs to the amidase family.
    
  0.903
BPSS2307
Putative amidase; C-terminal region is similar to Bacillus subtilis glutamyl-tRNA(Gln) amidotransferase subunit A GatA SWALL:GATA_BACSU (SWALL:O06491) (485 aa) fasta scores: E(): 1.8e-29, 32.27% id in 471 aa, and Xanthomonas axonopodis Glu-tRNAGln amidotransferase A subunit xac1002 SWALL:AAM35885 (EMBL:AE011729) (509 aa) fasta scores: E(): 1.4e-81, 54.41% id in 476 aa. CDS is extended at the N-terminus in comparison to orthologues. Possible alternative translational start site.
    
  0.903
BPSL0843
Aldehyde dehydrogenase family protein; Similar to previously sequenced Burkholderia sp. RP007 dehydrogenase PhnF SWALL:Q9ZHH7 (EMBL:AF061751) (483 aa) fasta scores: E(): 1.1e-103, 61.41% id in 482 aa. Similar to Rhizobium loti dehydrogenase mll7197 SWALL:Q986V2 (EMBL:AP003011) (481 aa) fasta scores: E(): 1.7e-114, 66.73% id in 481 aa, and to Ralstonia solanacearum probable vanillin dehydrogenase oxidoreductase protein Vdh or rsp0226 or rs05197 SWALL:Q8XT89 (EMBL:AL646077) (484 aa) fasta scores: E(): 2.7e-111, 65.63% id in 483 aa; Alternative start site at codon 11; Belongs to the aldeh [...]
    
 0.902
BPSL1020
Similar to Escherichia coli putative aldehyde dehydrogenase AldH or b1300 SWALL:DHAL_ECOLI (SWALL:P23883) (495 aa) fasta scores: E(): 2.3e-61, 41.12% id in 479 aa, and to Ralstonia solanacearum probable aldehyde dehydrogenase oxidoreductase protein rsc2350 or rs01196 SWALL:Q8XWX0 (EMBL:AL646069) (478 aa) fasta scores: E(): 5.1e-138, 73.31% id in 476 aa.
    
 0.902
BPSL1550
Similar to Bacillus subtilis betaine aldehyde dehydrogenase GbsA SWALL:DHAB_BACSU (SWALL:P71016) (490 aa) fasta scores: E(): 1.9e-59, 40.33% id in 476 aa, and to Ralstonia solanacearum putative betaine aldehyde dehydrogenase rsc1456 or rs03851 SWALL:Q8XZE5 (EMBL:AL646064) (478 aa) fasta scores: E(): 1.1e-127, 71.3% id in 474 aa.
    
 0.902
acoD
Similar to Alcaligenes eutrophus acetaldehyde dehydrogenase II AcoD SWALL:DHA2_ALCEU (SWALL:P46368) (506 aa) fasta scores: E(): 5.2e-172, 81.02% id in 506 aa.
    
 0.902
BPSS1466
Putative aldehyde dehydrogenase family protein; Similar to Streptomyces clavuligerus semialdehyde dehydrogenase Pcd SWALL:O85725 (EMBL:AF073895) (512 aa) fasta scores: E(): 2e-120, 66.05% id in 492 aa, and to Ralstonia solanacearum putative transmembrane aldehyde dehydrogenase oxidoreductase protein rsp1591 or rs02148 SWALL:Q8XPP7 (EMBL:AL646085) (504 aa) fasta scores: E(): 9.4e-134, 69.84% id in 504 aa, and to Rhizobium loti aldehyde dehydrogenase mll2867 SWALL:Q98HH4 (EMBL:AP003000) (504 aa) fasta scores: E(): 4.1e-132, 68.93% id in 499 aa.
    
 0.902
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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