STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS2169MoaA/NifB/PqqE family protein; Similar to Anabaena sp. hypothetical protein alr4269 SWALL:Q8YPC9 (EMBL:AP003595) (338 aa) fasta scores: E(): 2.6e-79, 56.17% id in 324 aa, and to Streptomyces coelicolor hypothetical protein SCO6766 or SC6A5.15 SWALL:Q9X7W1 (EMBL:AL939129) (340 aa) fasta scores: E(): 1.1e-73, 50.29% id in 340 aa. CDS is extended at the C-terminus in comparison to orthologues. (386 aa)    
Predicted Functional Partners:
BPSS2167
Putative glycosyl transferase; Similar to Synechocystis sp. hypothetical protein slr1566 SWALL:P74597 (EMBL:D90916) (395 aa) fasta scores: E(): 2.2e-66, 48.49% id in 398 aa, and to Anabaena sp. hypothetical protein alr0776 SWALL:Q8YYS0 (EMBL:AP003583) (396 aa) fasta scores: E(): 1.2e-55, 49.74% id in 396 aa.
 
   
 0.856
ispH
IspH protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.832
shc
Similar to Zymomonas mobilis squalene--hopene cyclase Shc SWALL:SQHC_ZYMMO (SWALL:P33990) (658 aa) fasta scores: E(): 7.5e-169, 62.28% id in 647 aa, and to Rhodopseudomonas palustris squalene-hopene cyclase Shc SWALL:O69790 (EMBL:Y09979) (654 aa) fasta scores: E(): 1.7e-182, 66.19% id in 639 aa.
 
   
 0.823
BPSS2330
Putative membrane protein; Similar to Ralstonia solanacearum probable lipoprotein transmembrane rsp0362 or rs00775 SWALL:Q8XSV5 (EMBL:AL646078) (805 aa) fasta scores: E(): 2.2e-07, 24.28% id in 873 aa. C-terminal region is similar to Zymomonas mobilis hypothetical protein SWALL:O69016 (EMBL:AF086791) (169 aa) fasta scores: E(): 1.1e-25, 55.28% id in 161 aa.
 
   
 0.815
BPSS2338
Hypothetical protein; Weakly similar to Synechocystis sp. hypothetical protein slr1977 SWALL:P74128 (EMBL:D90912) (244 aa) fasta scores: E(): 0.0058, 25.86% id in 232 aa.
 
   
 0.794
BPSL2398
Conserved hypothetical protein; Similar to Methanopyrus kandleri predicted Fe-S oxidoreductase MK0992 SWALL:Q8TWP0 (EMBL:AE010388) (483 aa) fasta scores: E(): 1.8e-33, 31.3% id in 428 aa. Weakly similar to the N-terminal region of Rhodobacter capsulatus magnesium-protoporphyrin IX monomethyl ester oxidative cyclase subunit BchE SWALL:BCHE_RHOCA (SWALL:P26168) (575 aa) fasta scores: E(): 2.1e-10, 25.69% id in 471 aa.
 
  
 0.790
BPSS2165
Conserved hypothetical protein; Similar to Zymomonas mobilis HpnA protein SWALL:O34285 (EMBL:AJ001401) (337 aa) fasta scores: E(): 1.2e-74, 64.41% id in 326 aa, and to Synechocystis sp. putative dihydroflavonol-4-reductase slr1706 SWALL:DFRA_SYNY3 (SWALL:P73212) (343 aa) fasta scores: E(): 6.6e-42, 43.11% id in 334 aa.
 
   
 0.780
BPSL0292
Putative membrane protein; Weakly similar to Chlorobium tepidum hypothetical protein CT1155 SWALL:AAM72388 (EMBL:AE012876) (354 aa) fasta scores: E(): 0.00043, 23.89% id in 318 aa, and Methanopyrus kandleri predicted integral membrane protein MK1387 SWALL:Q8TVK2 (EMBL:AE010432) (327 aa) fasta scores: E(): 0.0039, 23.88% id in 314 aa. CDS is extended athe N-terminus in comparison to other proteins. Possible alternative translational start site.
 
     0.754
BPSS0511
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein pa4313 SWALL:Q9HW88 (EMBL:AE004847) (333 aa) fasta scores: E(): 4.3e-05, 25.98% id in 304 aa, and to Mycobacterium leprae probable integral membrane protein ml2618 SWALL:Q9CD01 (EMBL:AL583926) (352 aa) fasta scores: E(): 0.12, 24.31% id in 329 aa.
 
     0.740
BPSL2396
Putative membrane protein; Weakly similar to Synechococcus sp. hypothetical protein see0027 SWALL:AAM82702 (EMBL:AY120853) (316 aa) fasta scores: E(): 0.0072, 27.15% id in 313 aa, and to Chlorobium tepidum hypothetical protein ct1155 SWALL:AAM72388 (EMBL:AE012876) (354 aa) fasta scores: E(): 0.018, 27.35% id in 329 aa.
 
     0.730
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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