STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytgB_2Putative rRNA methylase. (194 aa)    
Predicted Functional Partners:
yggH
Putative rRNA Methylase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
 0.786
yibK
rRNA Methylase (SpoU family); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
     
 0.499
CT_404
SAM dependent methyltransferase.
   
  
 0.471
recO
Hypothetical protein; Involved in DNA repair and RecF pathway recombination.
      
 0.449
Your Current Organism:
Chlamydia trachomatis
NCBI taxonomy Id: 272561
Other names: C. trachomatis D/UW-3/CX, Chlamydia trachomatis D/UW-3/CX, Chlamydia trachomatis str. D/UW-3/CX, Chlamydia trachomatis strain D/UW-3/CX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.