STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C0147ABC transporter, ATP-binding protein. (318 aa)    
Predicted Functional Partners:
CA_C0146
Related to ABC transporter permease component.
 
 
 0.948
CA_C3268
Uncharacterized conserved membrane protein, possible MDR-type transporter.
 
    0.825
CA_C0139
Predicted permease.
 
 
 0.760
CA_C3322
Predicted acetyltransferase.
  
    0.704
CA_C2722
RCC1 repeats protein (beta propeller fold).
   
 
 0.700
CA_C0140
Predicted permease.
 
 
 0.698
CA_C3025
Conserved membrane protein, possible permease, YHCI B.subtilis ortholog.
 
 
 0.697
CA_C0690
Endoglucanase, aminopeptidase M42 family.
  
    0.633
CA_C3341
Multimeric flavodoxin WrbA family protein.
   
    0.613
CA_C2791
MoaA/NirJ family Fe-S oxidoreductase.
   
    0.596
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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