Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CA_C1663Hypothetical protein. (58 aa)    
Predicted Functional Partners:
CA_C1662
Hypothetical protein.
  
    0.982
CA_C1904
Hypothetical protein.
   
    0.780
CA_C2857
Spore protease GPR related protein, YYAC B.subtilis ortholog.
   
  
 0.778
CA_C1620
Small acid-soluble spore protein.
      
 0.775
tlp
Uncharacterized protein, similar to TlpA of B.subtilis; Belongs to the Tlp family.
   
  
 0.723
sspA-2
Small acid-soluble spore protein.
      
 0.719
sspA
Small acid-soluble spore protein.
      
 0.717
CA_C1884
Hypothetical protein.
   
    0.704
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
      
 0.690
CA_C1522
Small acid-soluble spore protein.
      
 0.671
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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