STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C1727Protein serine/threonine phosphatases, PP2C family (YLOO B.subtilis ortholog). (269 aa)    
Predicted Functional Partners:
CA_C1728
Serine/threonine protein kinase, Pkn2 family (YLOP B.subtilis ortholog); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
 
 0.995
CA_C1725
Predicted rRNA methylase, SUN family; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.955
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.905
rsgA
Predicted GTPase (YLOQ B.subtilis ortholog); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.877
rlmN
Predicted Fe-S-cluster redox enzyme, YLON B.subtilis ortholog; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
  
  
 0.864
CA_C0404
Serine/threonine protein kinase fused to TPR repeats domain.
 
 0.854
rpiA-2
Primosomal protein N', superfamily II helicase; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
    0.801
CA_C1724
Predicted metal-dependent peptidase.
  
    0.801
CA_C1731
Predicted nucleotide-binding protein, YLOS B.subtilis ortholog.
     
 0.801
CA_C1730
Pentose-5-phosphate-3-epimerase, YLOR B.subtilis ortholog; Belongs to the ribulose-phosphate 3-epimerase family.
  
    0.794
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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