STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C2029Hypothetical protein. (55 aa)    
Predicted Functional Partners:
CA_C1776
HAD superfamily hydrolase.
   
    0.704
CA_C1020
Hypothetical protein.
   
    0.626
CA_C0468
HAD superfamily hydrolase.
   
    0.602
CA_C1976
Hypothetical secreted protein.
   
    0.599
CA_C3180
Oligopeptide ABC transporter, permease component.
   
    0.599
CA_C2028
Hypothetical protein, CF-4 family.
  
    0.527
CA_C2812
Hypothetical protein.
   
    0.440
CA_C0924
Predicted membrane protein.
   
    0.418
CA_C1008
Hypothetical protein, CF-30 family.
   
    0.418
CA_C1978
Predicted membrane protein.
   
    0.418
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.