STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C2042ABC transported MDR-type, permease component. (262 aa)    
Predicted Functional Partners:
CA_C2578
Glycosyltransferase.
   
    0.944
CA_C2040
ABC transported MDR-type, ATPase component.
 
  
 0.930
CA_C1043
Xre family DNA-binding domain and TPR-repeat containing protein.
   
    0.831
CA_C0804
Pectate lyase related protein, secreted.
   
    0.780
CA_C2041
ABC transported MDR-type, permease component.
 
   
0.767
CA_C2579
Uncharacterized conserved membrane protein.
   
    0.730
CA_C3610
ABC-type MDR transport system, permease component.
  
     0.701
CA_C3403
Predicted membrane protein.
  
     0.700
CA_C2529
Predicted acetyltransferase.
   
    0.680
CA_C2985
Hypothetical protein.
  
    0.678
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.