Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CA_C2229 | CA_C2499 | CA_C2229 | CA_C2499 | Pyruvate:ferredoxin oxidoreductase. | Pyruvate ferredoxin oxidoreductase. | 0.999 |
CA_C2229 | CA_C2567 | CA_C2229 | CA_C2567 | Pyruvate:ferredoxin oxidoreductase. | Superoxide dismutase (Fe/Mn family). | 0.843 |
CA_C2229 | citB | CA_C2229 | CA_C0971 | Pyruvate:ferredoxin oxidoreductase. | Aconitase A. | 0.708 |
CA_C2229 | rplM | CA_C2229 | CA_C3098 | Pyruvate:ferredoxin oxidoreductase. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.570 |
CA_C2499 | CA_C2229 | CA_C2499 | CA_C2229 | Pyruvate ferredoxin oxidoreductase. | Pyruvate:ferredoxin oxidoreductase. | 0.999 |
CA_C2499 | CA_C2567 | CA_C2499 | CA_C2567 | Pyruvate ferredoxin oxidoreductase. | Superoxide dismutase (Fe/Mn family). | 0.843 |
CA_C2499 | citB | CA_C2499 | CA_C0971 | Pyruvate ferredoxin oxidoreductase. | Aconitase A. | 0.709 |
CA_C2499 | rplM | CA_C2499 | CA_C3098 | Pyruvate ferredoxin oxidoreductase. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.570 |
CA_C2567 | CA_C2229 | CA_C2567 | CA_C2229 | Superoxide dismutase (Fe/Mn family). | Pyruvate:ferredoxin oxidoreductase. | 0.843 |
CA_C2567 | CA_C2499 | CA_C2567 | CA_C2499 | Superoxide dismutase (Fe/Mn family). | Pyruvate ferredoxin oxidoreductase. | 0.843 |
CA_C2567 | citB | CA_C2567 | CA_C0971 | Superoxide dismutase (Fe/Mn family). | Aconitase A. | 0.868 |
CA_C2567 | rncS | CA_C2567 | CA_C1748 | Superoxide dismutase (Fe/Mn family). | DsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.837 |
CA_C2567 | rplC | CA_C2567 | CA_C3133 | Superoxide dismutase (Fe/Mn family). | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.832 |
CA_C2567 | rplM | CA_C2567 | CA_C3098 | Superoxide dismutase (Fe/Mn family). | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.844 |
CA_C2567 | rplO | CA_C2567 | CA_C3114 | Superoxide dismutase (Fe/Mn family). | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.836 |
CA_C2567 | rplQ | CA_C2567 | CA_C3103 | Superoxide dismutase (Fe/Mn family). | Ribosomal protein L17. | 0.837 |
CA_C2567 | sodC | CA_C2567 | CA_C1363 | Superoxide dismutase (Fe/Mn family). | Superoxide dismutase, Cu-Zn family. | 0.829 |
CA_C2567 | ybeY | CA_C2567 | CA_C1293 | Superoxide dismutase (Fe/Mn family). | Uncharacterized conserved predicted metal-binding protein, YQFG ortholog; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.843 |
citB | CA_C2229 | CA_C0971 | CA_C2229 | Aconitase A. | Pyruvate:ferredoxin oxidoreductase. | 0.708 |
citB | CA_C2499 | CA_C0971 | CA_C2499 | Aconitase A. | Pyruvate ferredoxin oxidoreductase. | 0.709 |
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