STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C3043CPSC/CAPB subfamily ATPase. (224 aa)    
Predicted Functional Partners:
CA_C3044
CPSD/CAPA conserved membrane protein of Rol/Cld family.
 
 0.983
CA_C3061
CPSD/CAPA conserved membrane protein of Rol/Cld family.
 
 0.943
CA_C3042
O-actetyl transferase related protein.
  
    0.925
CA_C3045
CPSB/CAPC ortholog, PHP family hydrolase.
  
 0.921
CA_C3062
CPSB/CAPC ortholog, PHP family hydrolase.
  
 0.860
CA_C3041
O-actetyl transferase related protein.
  
    0.700
CA_C3059
Sugar transferases.
 
  
 0.668
CA_C2229
Pyruvate:ferredoxin oxidoreductase.
  
 
 0.655
CA_C2499
Pyruvate ferredoxin oxidoreductase.
  
 
 0.655
CA_C3046
Transcriptional regulator, LytR family.
  
  
 0.610
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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