STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C3559Uncharacterized conserved membrane protein, YHBJ B.subtilis (possible permease)ortholog. (228 aa)    
Predicted Functional Partners:
CA_C3561
ABC-type transporter, permease component.
 
  
 0.969
CA_C3560
ABC-type transporter, ATPase component.
 
 
 0.947
CA_C2003
Predicted permease.
 
   
 0.756
CA_C2255
Predicted permease.
 
   
 0.718
CA_C2731
Predicted permease.
 
  
 0.702
CA_C0527
Predicted permease, domain duplication.
 
  
 0.699
CA_C0862
Transmembrane protein.
   
    0.656
CA_C0530
Hypothetical protein.
 
    0.627
CA_C0068
(FS) similar to ABC transporter (permease), YXDM B.subtilis ortholog.
 
  
 0.623
CA_C0668
Predicted membrane protein.
 
  
 0.621
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.