STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ67182.1Transcriptional regulator, GntR family,Tn916-like, CTn1-Orf5. (124 aa)    
Predicted Functional Partners:
CAJ67184.2
Two-component response regulator Tn916-like,CTn1-Orf7.
  
    0.655
CAJ67183.2
Two-component sensor histidine kinase Tn916-like,CTn1-Orf6.
  
    0.636
CAJ68484.1
ABC-type transport system, multidrug-family permease.
  
  
 0.569
CAJ67186.1
ABC-type transport system, ATP-binding protein Tn916-like, CTn1-Orf9.
  
  
 0.542
CAJ67185.1
ABC-type transport system, permease Tn916-like,CTn1-Orf8.
  
    0.530
CAJ68482.1
Transcriptional regulator, GntR family.
  
     0.467
CAJ68471.1
Transcriptional regulator, GntR family.
  
    0.458
CAJ67181.1
Putative RNA polymerase sigma factor Tn916-like,CTn1-Orf4.
  
    0.437
CAJ68405.1
ABC-type transport system, permease protein.
  
  
 0.434
CAJ67188.1
ABC-type transport system, multidrug-family ATP-binding protein Tn916-like, CTn1-Orf11.
  
  
 0.430
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.