STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ67252.1Putative membrane protein Tn1549-like,CTn2-Orf24. (200 aa)    
Predicted Functional Partners:
CAJ67254.1
ABC-type transport system, cobalt-specific ATP-binding protein Tn1549-like, CTn2-Orf26.
 
    0.961
CAJ67253.1
ABC-type transport system, cobalt-specific permease Tn1549-like, CTn2-Orf25.
 
  
 0.957
CAJ67256.1
ABC-type transport system, multidrug-family permease Tn1549-like, CTn2-Orf28.
 
    0.929
CAJ67255.2
ABC-type transport system, multidrug-family permease Tn1549-like, CTn2-Orf27.
 
    0.927
CAJ67251.2
Transcriptional regulator, AraC family Tn1549-like, CTn2-Orf23.
 
    0.870
CAJ67257.1
Putative drug/sodium antiporter, MATE family,Tn1549-like, CTn2-Orf29.
 
  
 0.805
CCA62794.1
Putative conjugative transposon protein Tn1549-like, CTn2-Orf30.
       0.701
CAJ67258.1
Putative sigma factor Tn1549-like, CTn2-Orf31.
 
    0.674
cobA
Bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase.
  
  
 0.612
pfo
Pyruvate-ferredoxin oxidoreductase; Experimentally verified as part of mature spore proteome PMID:19542279.
  
  
 0.573
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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