STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ67394.1Putative aldo/keto reductase; putative ferredoxin. (331 aa)    
Predicted Functional Partners:
CAJ68390.1
Putative iron-sulfur protein.
 
    0.635
CAJ67117.1
Putative iron-sulfur-binding protein.
 
    0.595
LarE
Conserved hypothetical protein.
 
    0.475
CAJ67569.1
Conserved hypothetical protein.
  
     0.456
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate.
  
    0.451
CAJ67302.1
Putative iron-sulfur protein.
 
    0.418
LarB
Putative NCAIR-mutase (PurE)-related protein.
 
    0.415
CAJ68375.1
Conserved hypothetical protein.
  
   0.401
CAJ68946.1
Conserved hypothetical protein.
  
   0.401
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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