STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdu2Na(+)/H(+) antiporter. (397 aa)    
Predicted Functional Partners:
cdu1
Transcriptional regulator, beta-lactams repressor.
  
  
 0.766
CAJ67488.1
Chloride ion channel protein.
  
  
 0.663
cdd3
ABC-type transport system,lantibiotic/multidrug-family permease.
   
  
 0.613
cdd2
ABC-type transport system,lantibiotic/multidrug-family permease.
   
  
 0.610
CD630_06060
Fragment of conserved hypothetical protein (N-terminal region); IStron insertion site.
  
  
 0.523
tcdE
Holin-like pore-forming protein.
   
  
 0.484
tcdR
Alternative RNA polymerase sigma factors.
   
  
 0.445
tcdB
Toxin B.
   
  
 0.442
tcdC
Negative regulator of toxin gene expression.
   
  
 0.421
MetH
Putative homocysteine S-methyltransferase.
     
 0.406
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.