Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CAJ67640.1Transcriptional regulator, sigma-54-dependent. (458 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor.
 
   
 0.797
etfA2
Electron transfer flavoprotein alpha-subunit.
  
    0.568
AcrC
Putative acyl-CoA dehydrogenase.
  
    0.566
etfB2
Electron transfer flavoprotein beta-subunit,core.
  
    0.521
CAJ67636.1
Putative CoA-transferase, family III; Belongs to the CoA-transferase III family.
  
    0.479
CAJ67635.1
Putative permease, divalent anion symporter family.
 
    0.469
CAJ70155.1
Iron hydrogenase; Experimentally verified as part of mature spore proteome PMID:19542279.
 
 
    0.421
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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