STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ67864.1Putative transcriptional regulator, HTH. (179 aa)    
Predicted Functional Partners:
potB
ABC-type transport system,spermidine/putrescine permease.
 
    0.812
potA
ABC-type transport system,spermidine/putrescine ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
  
 0.780
CAJ67972.1
Transcriptional regulator, RmlC-type.
  
    0.728
potD
ABC-type transport system,spermidine/putrescine solute-binding protein.
 
  
 0.726
potC
ABC-type transport system,spermidine/putrescine permease.
 
    0.701
CAJ69671.1
Putative glycosyl transferase; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: down-regulated in Spo0A mutant PMID:24568651.
  
  
 0.483
CAJ68604.1
Transcriptional regulator, HTH-type.
 
 
0.474
CAJ67173.1
Transcriptional regulator, RmlC-type.
 
 
0.473
CapD
Putative polysaccharide biosynthesis protein.
  
  
 0.469
CAJ68903.1
Transcriptional regulator, AraC family.
  
 
 0.439
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.