STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rngRibonuclease G (RNase G) (Cytoplasmic axial filament protein). (473 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.934
CAJ70303.1
Upf0042 nucleotide-binding protein hmpref0220_2799; Displays ATPase and GTPase activities.
 
 
 0.819
eno
Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase); Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 
 0.815
CAJ68012.1
Conserved hypothetical protein.
  
    0.814
CAJ68011.1
Putative radical SAM-superfamily protein.
  
    0.800
jag
Putative SpoIIIJ-associated RNA/ssDNA-binding protein Jag.
   
   0.711
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
    0.690
CAJ68110.1
Putative RNA-binding protein; Belongs to the UPF0109 family.
    
   0.679
rpmA
50S ribosomal protein L27; Experimentally verified as part of mature spore proteome PMID:19542279; Belongs to the bacterial ribosomal protein bL27 family.
  
  
 0.666
CAJ68015.1
Putative ribosome-associated protein.
  
    0.643
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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