STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ68178.1Putative peptidase, M16 family; Belongs to the peptidase M16 family. (415 aa)    
Predicted Functional Partners:
CAJ69151.1
Putative oxidoreductase, FAD dependent.
   
 0.955
CAJ70309.1
Putative iron-only hydrogenase,electron-transferring subunit HymB-like; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
  
 
 0.885
CAJ70308.1
Putative iron-only hydrogenase,electron-transferring subunit HymA-like.
   
 
 0.861
pyrD1
Dihydroorotate dehydrogenase, catalytic subunit.
  
 
 0.816
pfo
Pyruvate-ferredoxin oxidoreductase; Experimentally verified as part of mature spore proteome PMID:19542279.
  
 
 0.783
CAJ68179.1
Putative sporulation protein.
 
  
 0.775
CAJ68390.1
Putative iron-sulfur protein.
  
 
 0.765
fdxA
Ferredoxin (4Fe-4S cluster-containing protein) (fdx-like); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.764
dapG
Aspartokinase 1 (Aspartokinase I) (1spartate kinase I); Belongs to the aspartokinase family.
  
  
 0.711
atpF1
ATP synthase subunit delta (ATP synthase F1 sector subunit delta); F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
   
 
 0.711
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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