Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CAJ68530.1Transcriptional regulator, RmlC-type. (183 aa)    
Predicted Functional Partners:
CAJ68359.2
Transcriptional regulator, HTH-type; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant. Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: up-regulated in Spo0A mutant PMID:24568651.
 
   
 0.783
CAJ68250.3
Putative trancriptional regulator; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651.
  
     0.771
CAJ68845.1
Putative enzyme, cyclase family.
  
    0.609
cysM
O-acetylserine (thiol)-lyase (O-acetylserine sulfhydrylase) (OAS-TL).
       0.503
CAJ68604.1
Transcriptional regulator, HTH-type.
 
  
0.454
CAJ68509.1
Transcriptional regulator, RmlC-type.
 
  
0.413
cinA
Putative competence-damage inducible protein,CinA family; Belongs to the CinA family.
     
 0.406
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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