STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ68621.1ABC-type transport system, multidrug-family ATP-binding protein. (281 aa)    
Predicted Functional Partners:
CAJ68622.1
ABC-type transport system, multidrug-family permease.
 
 
 0.991
CAJ68623.1
ABC-type transport system, multidrug-family permease.
 
 
 0.991
CAJ70098.1
ABC-type transport system, multidrug-family ATP-binding protein.
  
 
 
0.911
CAJ68620.1
Transcriptional regulator, TetR family.
 
    0.873
CAJ70057.1
ABC-type transport system, multidrug-family permease.
 
 
 0.666
CAJ68468.1
ABC-type transport system, multidrug-family permease.
 
  
 0.593
CAJ68624.1
Transcriptional regulator, HTH-type.
  
    0.558
def1
Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
    0.530
CAJ67478.1
ABC-type transport system,lantibiotic/multidrug-family permease.
  
 
 0.497
CAJ68836.1
ABC-type transport system, ATP-binding protein.
 
   
0.487
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.