STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ68646.1ABC-type transport system, aminoacid-family ATP-binding protein. (223 aa)    
Predicted Functional Partners:
CAJ68645.1
ABC-type transport system, aminoacid-family permease.
 
 0.994
CAJ67585.1
ABC-type transport system, aminoacid-family permease.
 
 0.992
CAJ69060.1
ABC-type transport system,cystine/aminoacid-family permease.
 
 0.967
CAJ68644.1
ABC-type transport system, aminoacid-family extracellular solute-binding protein.
 
 0.962
CAJ69059.1
ABC-type transport system,cystine/aminoacid-family permease; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
 
 0.960
CAJ67584.1
ABC-type transport system, aminoacid-family extracellular solute-binding protein.
 
 
 0.925
CAJ69061.1
ABC-type transport system,cystine/aminoacid-family extracellular solute-binding protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
 
 
 0.916
CAJ69058.1
ABC-type transport system,cystine/aminoacid-family extracellular solute-binding protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
 
 
 0.910
appC
ABC-type transport system, oligopeptide-family permease protein.
    
 0.902
phnK
ABC-type transport system, phosphonate-specific ATP-binding protein.
     
0.901
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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