STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ68656.1Conserved hypothetical protein. (348 aa)    
Predicted Functional Partners:
CAJ68657.1
Transcriptional regulator, MerR family.
 
    0.657
CAJ67521.1
Conserved hypothetical protein.
  
    0.572
CAJ68521.1
Putative membrane protein.
  
    0.564
CAJ67102.1
Conserved hypothetical protein.
  
    0.543
CAJ70094.1
Transcriptional regulator, MerR family.
  
     0.537
CAJ69359.1
Transcriptional regulator, ArsR family.
  
    0.526
CAJ67340.2
Putative conjugative transposon protein Tn5397,CTn3-Orf6.
  
     0.500
CAJ70093.1
Putative penicillin-binding protein.
  
    0.455
argG
Argininosuccinate synthase (Citrulline--aspartate ligase); Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.423
CAJ67448.1
Transcriptional regulator, MerR family; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
 
    0.422
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.