STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ68715.2Conserved repeat protein; PMID:19781061; previously annotated as pseudogene. Experimentally verified as part of mature spore proteome PMID:19542279. (1374 aa)    
Predicted Functional Partners:
CAJ68721.1
Putative conjugative transfer protein Tn1549-like, CTn5-Orf5.
     
 0.793
CAJ68352.1
Conserved hypothetical protein.
 
    0.681
CAJ69105.1
Putative cyclic nucleotides-binding protein.
  
   
 0.643
YyaL
Conserved hypothetical protein.
    
 
 0.627
bclA2
Putative exosporium glycoprotein.
 
 0.529
CAJ66976.1
Putative membrane-membrane-associated CAAX amino terminal protease.
  
   
 0.490
CAJ68722.1
Transcriptional regulator, AraC family; Tn1549-like, CTn5-Orf6.
  
  
 0.488
CAJ69685.1
Putative calcium-binding adhesion protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant. Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: up-regulated in Spo0A mutant PMID:24568651.
 
 
 0.470
isp
Intracellular serine protease; Belongs to the peptidase S8 family.
  
 
 0.449
cspC
Subtilisin-like serine germination related protease; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279.
  
 
 0.449
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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