STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CD630_19280Fragment of transcription regulator, AraC family (C-terminal region); Direct repeat flanking the inserted geneomic island. (452 aa)    
Predicted Functional Partners:
CAJ68804.1
Putative membrane protein.
 
 
 0.968
rsbV
Anti-anti-sigma factor; Experimentally verified as part of mature spore proteome PMID:19542279; Belongs to the anti-sigma-factor antagonist family.
  
   0.904
CAJ68689.1
Putative membrane protein.
  
     0.764
CAJ68947.1
Conserved hypothetical protein.
  
     0.744
CAJ68279.1
Putative membrane protein.
  
    0.743
YccF
Conserved hypothetical protein.
  
  
 0.731
CAJ68204.1
Conserved hypothetical protein, DUF1700.
  
    0.719
agrB
Accessory gene regulator.
  
    0.660
motB
Flagellar motor rotation protein MotB (Chemotaxis protein MotB); Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
  
   0.638
CAJ67579.1
Putative OmpA/MotB proton channel; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651.
  
   0.638
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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