Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CAJ68853.1ABC-type transport system, ATP-binding protein. (245 aa)    
Predicted Functional Partners:
CAJ68855.1
ABC-type transport system, permease.
 
 0.989
CAJ68854.1
ABC-type transport system, extracellular solute-binding protein; Experimentally verified as part of mature spore proteome PMID:19542279.
 
 
 0.988
ssuC2
ABC-type transport system, sulfonate-family permease.
 
 0.950
ssuC
ABC-type transport system, sulfonates-family permease.
 
 0.946
CAJ68856.1
Conserved hypothetical protein.
 
    0.920
CAJ68779.1
ABC-type transport system, permease.
 
 0.910
CAJ68392.1
ABC-type transport system, permease; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: up-regulated in Spo0A mutant PMID:24568651.
 
    0.872
ssuA2
ABC-type transport system, sulfonate-family extracellular solute-binding protein.
 
 
 0.843
CAJ67841.1
ABC-type transport system,nitrate/sulfonate/taurine permease.
 
 0.841
ssuA
ABC-type transport system,alkanesulfonates-family extracellular solute-binding protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant. Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: down-regulated in Spo0A mutant PMID:24568651.
 
 
 0.813
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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