STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ68881.1Transcriptional regulator, HTH-type. (119 aa)    
Predicted Functional Partners:
CAJ68880.1
Conserved hypothetical protein.
 
    0.730
CAJ67343.1
Putative RNA polymerase sigma factor Tn5397,CTn3-Orf7.
  
   
 0.664
CAJ70272.1
Putative conjugative transposon protein Tn916-like, CTn7-Orf3.
  
    0.661
CAJ67344.1
Putative conjugative transposon protein Tn5397,CTn3-Orf8.
  
     0.637
CAJ67937.1
Putative conjugative transposon protein Tn1549-like, CTn4-Orf32.
  
    0.619
CAJ67181.1
Putative RNA polymerase sigma factor Tn916-like,CTn1-Orf4.
  
    0.616
CAJ70271.1
Putative conjugative transposon protein Tn916-like, CTn7-Orf2.
  
    0.607
CAJ70225.1
Putative conjugative transposon protein Tn916-like, CTn6-Orf4.
  
    0.601
CAJ69109.1
Putative extrachromosomal origin protein.
  
    0.593
CAJ70226.1
Putative RNA polymerase sigma factor Tn916-like,CTn6-Orf5.
  
  
 0.554
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.