STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grdBGlycine reductase complex component B gamma subunit (selenocysteine); Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. (436 aa)    
Predicted Functional Partners:
grdA
Glycine reductase complex selenoprotein A (selenocysteine).
 
 
 0.998
grdD
Glycine reductase complex component C subunit alpha (Protein PC alpha); Experimentally verified as part of mature spore proteome PMID:19542279.
 
 
 0.996
grdC
Glycine reductase complex component C subunit beta (Protein PC beta).
 
 
 0.996
grdE
Glycine reductase complex component B subunits alpha and beta (Selenoprotein PB alpha/beta) [Contains: Betaine reductase component B subunit beta; Betaine reductase component B subunit alpha].
 
 
 0.994
grdX
Putative glycine reductase complex component.
 
  
 0.914
trxA2
Thioredoxin 2 (Trx2); Belongs to the thioredoxin family.
 
  
 0.883
CAJ68608.1
Glycine/sarcosine/betaine reductase complex,protein B, alpha and beta subunits.
 
  
 0.840
trxB3
Thioredoxin reductase 3; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
 
  
 0.798
prdA
D-proline reductase proprotein prdA; Experimentally verified as part of mature spore proteome PMID:19542279.
 
   
 0.631
prdD
Proline reductase PrdD.
 
   
 0.613
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.