STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ69309.1Putative pyridoxal phosphate-dependent transferase. (402 aa)    
Predicted Functional Partners:
CAJ70573.1
Putative aminotransferase; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279.
  
  
 
0.904
CAJ69308.1
Transporter, Major Facilitator Superfamily (MFS).
  
    0.733
ptb2
Phosphate butyryltransferase (Phosphotransbutyrylase).
  
    0.710
buk1
Butyrate kinase 1 (BK 1) (Branched-chain carboxylic acid kinase 1); Belongs to the acetokinase family.
  
    0.674
pabC
Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase) (ADC lyase) (ADCL).
  
 
 0.563
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.468
VorA'3
Putative flavodoxin/ferredoxin oxidoreductase gamma subunit.
  
    0.452
VorA3
Putative flavodoxin/ferredoxin oxidoreductase beta subunit.
  
    0.445
VorB3
Putative flavodoxin/ferredoxin oxidoreductase alpha subunit.
  
    0.439
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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