STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PagLPutative glycoside hydrolase, family 4; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. (450 aa)    
Predicted Functional Partners:
CAJ69953.1
PTS system, alpha-glucoside-specific IIBC component.
 
 0.926
CAJ69396.1
PTS system, glucose-like IIBC component.
 
 0.912
treA
Trehalose-6-phosphate hydrolase; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
   
 
 0.908
mapA
Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase.
  
 
 0.905
TreP
Glycosyl hydrolase/phosphorylase.
  
 
 0.905
CAJ69398.1
PTS system, glucose-like IIA component.
  
 
 0.801
CAJ69923.1
PTS system, glucose-like IIBC component.
 
 
 0.743
CAJ68194.1
PTS system, glucose-like IIBC component.
 
 
 0.728
CAJ67293.1
Transcriptional regulator, RpiR family.
 
  
 0.724
ptsG-A
PTS system, glucose-specific IIA component; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651.
  
 
 0.696
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.