STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tagABCPTS system, tagatose-specific IIABC component. (638 aa)    
Predicted Functional Partners:
fruK
Fructose 1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
 0.999
tagK
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
 0.998
LacC
Putative carbohydrate/purine kinase; putative tagatose-6-phosphate kinase LacC; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
 0.986
ptsH
PTS system, HPr protein.
  
 
 0.984
CAJ69975.1
Transcription antiterminator, PTS operon regulator.
  
  
 0.977
CAJ69454.1
Transcription antiterminator.
  
  
 0.974
CAJ69909.1
PTS system, mannose-specfic IIA component.
  
0.951
mtlF
PTS system, mannitol-specific, EIIA component; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: up-regulated in Spo0A mutant PMID:24568651.
  
 0.945
bglF2
PTS system, beta-glucoside-specific IIABC component, bglF2.
  
  
 0.933
bglF3
PTS system, beta-glucoside-specific IIABC component, bglF3; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651.
  
  
 0.933
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.