STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ70102.1Putative nitroreductase. (197 aa)    
Predicted Functional Partners:
CAJ67590.1
Putative nitroreductase; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: down-regulated in Spo0A mutant PMID:24568651.
  
    0.756
CAJ70103.1
Putative membrane protein.
  
    0.608
CAJ69863.1
Putative AMP-binding protein.
   
 
 0.593
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.563
CAJ68123.1
ABC-type transport system, multidrug-family permease.
  
  
 0.496
CAJ68468.1
ABC-type transport system, multidrug-family permease.
  
  
 0.496
gloA
Lactoylglutathione lyase.
  
  
 0.488
CAJ68480.1
ABC-type transport system, permease.
  
  
 0.476
CAJ70254.1
Putative nitroreductase.
  
  
0.427
CAJ68122.2
ABC-type transport system, multidrug-family permease.
  
  
 0.423
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.