Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAJ70105.1Transcriptional regulator, MarR family. (153 aa)    
Predicted Functional Partners:
CAJ70104.1
Putative multi antimicrobial extrusion protein,MatE family.
 
  
 0.838
CAJ69715.1
Transcriptional regulator, MarR family.
  
    0.749
CAJ69097.1
Transcriptional regulator, MarR family.
  
     0.681
CAJ70106.2
Transcriptional regulator, PadR family.
 
  
 0.512
opuCC
ABC-type transport system, glycine betaine/carnitine/choline permease.
  
  
 0.507
CAJ70113.1
ABC-type transport system, glycine betaine/carnitine/choline permease.
  
  
 0.507
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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