Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAJ70106.2Transcriptional regulator, PadR family. (171 aa)    
Predicted Functional Partners:
CAJ70107.2
Conserved hypothetical protein.
  
    0.679
CAJ70108.1
Conserved hypothetical protein.
       0.621
CAJ70105.1
Transcriptional regulator, MarR family.
 
  
 0.512
CAJ69359.1
Transcriptional regulator, ArsR family.
 
  
 0.451
CAJ67521.1
Conserved hypothetical protein.
 
  
 0.430
CAJ68521.1
Putative membrane protein.
  
    0.428
CAJ67413.2
Transcriptional regulator, TetR family.
  
  
 0.426
CAJ68657.1
Transcriptional regulator, MerR family.
  
  
 0.422
CAJ69453.1
Transcriptional regulator, MerR family.
  
   
 0.416
CAJ69919.1
Conserved hypothetical protein.
  
    0.415
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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