Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CAJ68804.1 | CAJ70367.1 | CD630_19290 | CD630_34640 | Putative membrane protein. | Putative lipoprotein. | 0.775 |
CAJ68804.1 | CAJ70426.1 | CD630_19290 | CD630_35220 | Putative membrane protein. | Uncharacterised protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279. | 0.543 |
CAJ68804.1 | sipL | CD630_19290 | CD630_35670 | Putative membrane protein. | Spore coat protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279. | 0.719 |
CAJ69688.1 | CAJ70367.1 | CD630_28000 | CD630_34640 | Putative membrane protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. | Putative lipoprotein. | 0.794 |
CAJ69688.1 | CAJ70426.1 | CD630_28000 | CD630_35220 | Putative membrane protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. | Uncharacterised protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279. | 0.774 |
CAJ69688.1 | NdoAI | CD630_28000 | CD630_34620 | Putative membrane protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. | Putative antitoxin EndoAI. | 0.428 |
CAJ69688.1 | sipL | CD630_28000 | CD630_35670 | Putative membrane protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. | Spore coat protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279. | 0.779 |
CAJ69688.1 | spoIV | CD630_28000 | CD630_24420 | Putative membrane protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. | Stage IV sporulation protein. | 0.732 |
CAJ70367.1 | CAJ68804.1 | CD630_34640 | CD630_19290 | Putative lipoprotein. | Putative membrane protein. | 0.775 |
CAJ70367.1 | CAJ69688.1 | CD630_34640 | CD630_28000 | Putative lipoprotein. | Putative membrane protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. | 0.794 |
CAJ70367.1 | CAJ70368.1 | CD630_34640 | CD630_34650 | Putative lipoprotein. | Uncharacterised CBS domain protein. | 0.798 |
CAJ70367.1 | CAJ70426.1 | CD630_34640 | CD630_35220 | Putative lipoprotein. | Uncharacterised protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279. | 0.787 |
CAJ70367.1 | NdoAI | CD630_34640 | CD630_34620 | Putative lipoprotein. | Putative antitoxin EndoAI. | 0.797 |
CAJ70367.1 | acpS | CD630_34640 | CD630_34660 | Putative lipoprotein. | Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.803 |
CAJ70367.1 | alr2 | CD630_34640 | CD630_34630 | Putative lipoprotein. | Alanine racemase 2; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.898 |
CAJ70367.1 | cwlD | CD630_34640 | CD630_01060 | Putative lipoprotein. | Germination-specific N-acetylmuramoyl-L-alanine amidase, Autolysin. | 0.955 |
CAJ70367.1 | sipL | CD630_34640 | CD630_35670 | Putative lipoprotein. | Spore coat protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279. | 0.772 |
CAJ70367.1 | spoIV | CD630_34640 | CD630_24420 | Putative lipoprotein. | Stage IV sporulation protein. | 0.772 |
CAJ70368.1 | CAJ70367.1 | CD630_34650 | CD630_34640 | Uncharacterised CBS domain protein. | Putative lipoprotein. | 0.798 |
CAJ70368.1 | NdoAI | CD630_34650 | CD630_34620 | Uncharacterised CBS domain protein. | Putative antitoxin EndoAI. | 0.693 |
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