Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CAJ70575.1Conserved hypothetical protein. (87 aa)    
Predicted Functional Partners:
YedF
Selenium metabolism protein yedf; Experimentally verified as part of mature spore proteome PMID:19542279; Belongs to the sulfur carrier protein TusA family.
 
   
 0.806
CAJ70574.1
Conserved hypothetical protein.
       0.770
SufS2
Putative cysteine desulfurase family protein.
 
   
 0.571
CAJ70573.1
Putative aminotransferase; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279.
  
    0.546
CAJ69320.1
Uncharacterised protein; Experimentally verified as part of mature spore proteome PMID:19542279.
  
     0.494
grdX
Putative glycine reductase complex component.
  
    0.472
CAJ70577.1
Transcriptional regulator, TPR family.
  
    0.436
grdB
Glycine reductase complex component B gamma subunit (selenocysteine); Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651.
  
     0.425
CAJ68104.1
Putative radical SAM-superfamily protein.
  
     0.405
grdE
Glycine reductase complex component B subunits alpha and beta (Selenoprotein PB alpha/beta) [Contains: Betaine reductase component B subunit beta; Betaine reductase component B subunit alpha].
  
    0.403
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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