STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SufS2Putative cysteine desulfurase family protein. (380 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase (Selenophosphate synthetase) (Selenium donor protein); Synthesizes selenophosphate from selenide and ATP.
  
 0.955
CAJ68136.1
Fe-s iron-sulfur cluster assembly protein, nifu family.
  
 
 0.930
trxB
Putative thioredoxin-disulfide reductase; Experimentally verified as part of mature spore proteome PMID:19542279.
  
 
 0.916
trxB3
Thioredoxin reductase 3; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
  
 
 0.916
trxB2
Thioredoxin reductase.
  
 
 0.915
CAJ70515.1
Putative iron-sulfur assembly protein.
  
 
 0.780
CAJ70516.1
ABC-type transport system, ATP-binding protein.
  
  
 0.758
spo0J
Stage 0 sporulation protein J, site-specific DNA-binding protein; Belongs to the ParB family.
  
    0.725
CAJ69034.1
Putative endonuclease/exonuclease/phosphatase.
    
   0.715
soj
Transcriptional regulator, sporulation initiation inhibitor, chromosome partitioning protein.
  
    0.695
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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