STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GDI0109Conserved hypothetical protein. (154 aa)    
Predicted Functional Partners:
GDI0111
Conserved hypothetical protein.
 
     0.929
traF
Putative conjugal transfer protein traF.
 
     0.928
GDI0105
Putative transcriptor regulator.
 
     0.865
GDI0106
Putative replication protein.
 
     0.850
GDI0396
Conserved hypothetical protein.
  
     0.774
GDI2799
Conserved hypothetical protein.
  
     0.774
slt
Putative soluble lytic murein transglycosylase precursor.
       0.773
GDI0129
Conserved hypothetical protein.
  
     0.772
GDI2748
Conserved hypothetical protein.
  
     0.772
GDI2916
Conserved hypothetical protein.
  
     0.772
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.