STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sltPutative soluble lytic murein transglycosylase precursor. (233 aa)    
Predicted Functional Partners:
traF
Putative conjugal transfer protein traF.
 
     0.813
GDI0111
Conserved hypothetical protein.
 
     0.799
GDI0109
Conserved hypothetical protein.
       0.773
GDI0724
Putative lytic transglycosylase, catalytic.
  
   
 0.647
GDI0108
Putative DNA methylase N-4/N-6.
 
     0.552
GDI0105
Putative transcriptor regulator.
 
     0.510
fliI
Flagellum-specific ATP synthase.
 
    0.507
GDI2735
Putative transposase.
  
     0.450
GDI0106
Putative replication protein.
       0.427
GDI0107
Putative cobyrinic acid a,c-diamide synthase.
       0.427
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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